SNP Profiles matching ICS 1

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
1._RUQ_817	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
2._ICS_1	_	_	AA	GT	CC	_	AA	CG	AG	CT	_	_	AT	_
3._ICS_1	_	_	AA	GT	CC	_	AA	CG	AG	CT	_	_	AT	_
4._ICS_1	_	_	AA	GT	CC	_	AA	CG	AG	CT	_	_	AT	_
5._ICS_1	_	_	AA	GT	CC	_	AA	CG	AG	CT	_	_	AT	_
6._ICS_1	_	_	AA	GT	CC	_	AA	CG	AG	CT	_	_	AT	_
7._PA_70_[PER]	_	_	AA	GT	CC	_	AA	CG	AG	CT	_	_	AT	_
8._ICS_1	_	_	AA	GT	CC	_	AA	CG	AG	CT	_	_	AT	_
9._ICS_1	_	_	AA	GT	CC	_	AA	CG	AG	CT	_	_	AT	_
10._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
11._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
12._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
13._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
14._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
15._GC-04-053-3-17	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
16._NA	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
17._RUQ_847	_	_	AA	GT	CC	_	AA	CG	AG	CT	_	_	AT	_
18._RUQ_847	_	_	AA	GT	CC	_	AA	CG	AG	CT	_	_	AT	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	TT	TT	CC	AA	CT	TT	CT	GT	GG	GT	AC	CG
1._RUQ_817	AG	CC	TT	TT	CC	AA	CT	TT	CT	GT	GG	GT	AC	CG
2._ICS_1	AG	CC	TT	TT	CC	AC	_	TT	_	GT	_	_	_	CG
3._ICS_1	AG	CC	TT	TT	CC	AC	_	TT	_	GT	_	_	_	CG
4._ICS_1	AG	CC	TT	TT	CC	AC	_	TT	_	GT	_	_	_	CG
5._ICS_1	AG	CC	TT	TT	CC	AC	_	TT	_	GT	_	_	_	CG
6._ICS_1	AG	CC	TT	TT	CC	AC	_	TT	_	GT	_	_	_	CG
7._PA_70_[PER]	AG	CC	TT	TT	CC	AC	_	TT	_	GT	_	_	_	CG
8._ICS_1	AG	CC	TT	TT	_	AC	_	TT	_	GT	_	_	_	CG
9._ICS_1	_	CC	TT	TT	CC	AC	_	TT	_	GT	_	_	_	_
10._NA	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
11._NA	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
12._NA	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
13._NA	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
14._NA	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
15._GC-04-053-3-17	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
16._NA	AG	CC	TT	TT	_	AC	CT	TT	CC	GT	GG	GT	AC	CG
17._RUQ_847	AG	CC	TT	TT	CC	AC	_	TT	_	GT	_	_	_	CG
18._RUQ_847	AG	CC	CT	TT	CC	AC	_	CT	_	GT	_	_	_	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CG	CC	AG	TT	GT	AA	AA	TT	CT	TT	CT	GG	AA	X_X
1._RUQ_817	CG	CC	AG	TT	GT	AA	AA	TT	CT	TT	CT	GG	AA	X_X
2._ICS_1	_	CC	AG	TT	_	_	_	TT	_	_	CT	GG	AA	X_X
3._ICS_1	_	CC	AG	TT	_	_	_	TT	_	_	CT	GG	AA	X_X
4._ICS_1	_	CC	AG	TT	_	_	_	TT	_	_	CT	GG	AA	X_X
5._ICS_1	_	CC	AG	TT	_	_	_	TT	_	_	CT	GG	AA	X_X
6._ICS_1	_	CC	AG	TT	_	_	_	TT	_	_	CT	GG	AA	X_X
7._PA_70_[PER]	_	CC	AG	TT	_	_	_	TT	_	_	CT	GG	AA	X_X
8._ICS_1	_	CC	AG	TT	_	_	_	TT	_	_	CT	GG	AA	X_X
9._ICS_1	_	CC	AG	TT	_	_	_	TT	_	_	CT	GG	AA	X_X
10._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
11._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
12._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
13._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
14._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
15._GC-04-053-3-17	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
16._NA	CG	CC	AG	TT	GT	AA	AA	TT	TT	TT	CT	GG	AA	X_X
17._RUQ_847	_	CC	AG	TT	_	_	_	TT	_	_	CT	GG	AG	X_X
18._RUQ_847	_	CC	AG	TT	_	_	_	TT	_	_	CT	GG	AG	X_X

Input profile: ICS_1 RUQ_847

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._ICS_5 RUQ_817

identical
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

3._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

4._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

5._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

6._ICS_1

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._PA_70_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._ICS_1

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

9._ICS_1

97.7 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

10._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

11._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

12._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

13._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

14._ICS_1 NA

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

15._PA_70_[PER] GC-04-053-3-17

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

16._ICS_1 NA

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

17._ICS_1 RUQ_847

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

18._ICS_1 RUQ_847

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484